arXiv:2511.12635v1 Announce Type: cross Abstract: Context: Large language models (LLMs) are released faster than users' ability to evaluate them rigorously. When LLMs underpin research, such as identifying relevant literature for systematic reviews (SRs), robust empirical assessment is essential. Objective: We identify and discuss key challenges in assessing LLM performance for selecting relevant literature, identify good (evaluation) practices, and propose recommendations. Method: Using a recent large-scale study as an example, we identify problems with the use of traditional metrics for assessing the performance of Gen-AI tools for identifying relevant literature in SRs. We analyzed 27 additional papers investigating this issue, extracted the performance metrics, and found both good practices and widespread problems, especially with the use and reporting of performance metrics for SR screening. Results: Major weaknesses included: i) a failure to use metrics that are robust to imbalanced data and do not directly indicate whether results are better than chance, e.g., the use of Accuracy, ii) a failure to consider the impact of lost evidence when making claims concerning workload savings, and iii) pervasive failure to report the full confusion matrix (or performance metrics from which it can be reconstructed) which is essential for future meta-analyses. On the positive side, we extract good (evaluation) practices on which our recommendations for researchers and practitioners, as well as policymakers, are built. Conclusions: SR screening evaluations should prioritize lost evidence/recall alongside chance-anchored and cost-sensitive Weighted MCC (WMCC) metric, report complete confusion matrices, treat unclassifiable outputs as referred-back positives for assessment, adopt leakage-aware designs with non-LLM baselines and open artifacts, and ground conclusions in cost-benefit analysis where FNs carry higher penalties than FPs.